API Reference

petab	PEtab global
petab.composite_problem	PEtab problems consisting of multiple models
petab.core	PEtab core functions (or functions that don’t fit anywhere else)
petab.conditions	Functions operating on the PEtab condition table
petab.C	This file contains constant definitions.
petab.lint	Integrity checks and tests for specific features used
petab.measurements	Functions operating on the PEtab measurement table
petab.parameter_mapping	Functions related to mapping parameter from model to parameter estimation problem
petab.parameters	Functions operating on the PEtab parameter table
petab.problem	PEtab Problem class
petab.sampling	Functions related to parameter sampling
petab.sbml	Functions for interacting with SBML models
petab.yaml	Code regarding the PEtab YAML config files
petab.visualize.data_overview	Functions for creating an overview report of a PEtab problem
petab.visualize.helper_functions	This file should contain the functions, which PEtab internally needs for plotting, but which are not meant to be used by non-developers and should hence not be directly visible/usable when using import petab.visualize.
petab.visualize.plot_data_and_simulation(…)	Main function for plotting data and simulations.
petab.visualize.plotting_config	Plotting config