petab.visualize.data_overview

Functions for creating an overview report of a PEtab problem

Functions

create_report(problem, model_name)	Create an HTML overview data / model overview report
get_data_per_observable(measurement_df)	Get table with number of data points per observable and condition
main()	Data overview generation with example data from the repository for testing

petab.visualize.data_overview.copyfile(src, dst, *, follow_symlinks=True)

Copy data from src to dst in the most efficient way possible.

If follow_symlinks is not set and src is a symbolic link, a new symlink will be created instead of copying the file it points to.

petab.visualize.data_overview.create_report(problem: petab.problem.Problem, model_name: str) → None

Create an HTML overview data / model overview report

Parameters

• problem – PEtab problem

• model_name – Name of the model, used for file name for report

petab.visualize.data_overview.get_data_per_observable(measurement_df: pandas.core.frame.DataFrame) → pandas.core.frame.DataFrame

Get table with number of data points per observable and condition

Parameters

measurement_df – PEtab measurement data frame

Returns

Pivot table with number of data points per observable and condition

Return type

data_per_observable

petab.visualize.data_overview.main()

Data overview generation with example data from the repository for testing