petab.visualize.helper_functions
This file should contain the functions, which PEtab internally needs for plotting, but which are not meant to be used by non-developers and should hence not be directly visible/usable when using import petab.visualize.
Functions
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Create dataset ID list from a list of simulation condition IDs or observable IDs. |
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Generate DATASET_ID column from condition_ids and observable_ids. |
- petab.visualize.helper_functions.create_dataset_id_list_new(df: DataFrame, group_by: str, id_list: List[List[str]]) List[List[str]][source]
Create dataset ID list from a list of simulation condition IDs or observable IDs.
- Parameters:
df – Measurements or simulations DataFrame.
group_by – Defines grouping of data to plot.
id_list – Grouping list. Each sublist corresponds to a subplot in a figure, and contains the IDs of observables or simulation conditions for the subplot.
- Returns:
A list of datasetIds
- petab.visualize.helper_functions.generate_dataset_id_col(exp_data: DataFrame) List[str][source]
Generate DATASET_ID column from condition_ids and observable_ids.
- Parameters:
exp_data – A measurement (simulation) DataFrame in the PEtab format.
- Returns:
A list with generated datasetIds for each entry in the measurement
(simulation) DataFrame