petab.visualize.data_overview¶
Functions for creating an overview report of a PEtab problem
Functions
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Create an HTML overview data / model overview report |
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Get table with number of data points per observable and condition |
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Data overview generation with example data from the repository for testing |
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petab.visualize.data_overview.
copyfile
(src, dst, *, follow_symlinks=True)¶ Copy data from src to dst.
If follow_symlinks is not set and src is a symbolic link, a new symlink will be created instead of copying the file it points to.
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petab.visualize.data_overview.
create_report
(problem: petab.problem.Problem, model_name: str) → None¶ Create an HTML overview data / model overview report
- Parameters
problem – PEtab problem
model_name – Name of the model, used for file name for report
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petab.visualize.data_overview.
get_data_per_observable
(measurement_df: pandas.core.frame.DataFrame) → pandas.core.frame.DataFrame¶ Get table with number of data points per observable and condition
- Parameters
measurement_df – PEtab measurement data frame
- Returns
Pivot table with number of data points per observable and condition
- Return type
data_per_observable
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petab.visualize.data_overview.
main
()¶ Data overview generation with example data from the repository for testing